Genome-Scale Modeling of Low Dose Irradiation Responses Using Microarray Based Gene Networks

• 2006 Workshop:
  Co-Regulation Among Genes and Pathways that are Responsive to Low-Dose Ionizing Radiation.
  Coleman, M.A., Krefft, A., Pearson, F., Peterson, L.E., Li, J.J., Xin., X., Critchlow, T., Altintas, I., Ludaescher, B., and Wyrobek, A.J.
  
  Molecular Mechanisms and Cellular Consequences of Low-Dose Exposure to Ionizing Radiation
  Wyrobek, A.J., Marchetti, F., Lowe, X, Lu, X., Kohwi-Shigematsu, Davy, B., Schmid, T.E., Ahn, S., Nijjar, T., and Coleman, M.A.
  
  
• 2005 Workshop
  Using Co-Regulation to Understand Low-Dose Ionizing Radiation Responsive Genes and Pathways.
  Coleman, M.A., Xin, X., Critchlow, T.J., Ovcharenko, I., Marchetti, F., Krishnan, K., and Wyrobek, A.J.
  
• 2003 Workshop
  Genome-Scale Modeling of Low-Dose Radiation Responses Using Microarray-Based Gene Networks
  Coleman, M.A., Cricthlow, T., Nelson, D., Peterson, L., and Wyrobek, A.J.
  
• Microarray Transcription Profiles for Adaptive Response in Human
  Lymphoblastoid Cells Identify Molecular Linkages Between DNA Damage
  and Signal Transduction
  Coleman, M.A., Marchetti, F., Nelson, D., Peterson, L., Yin, E., and Wyrobek, A.J.

• 2002 Workshop:
  Genome-Scale Modeling of Low-Dose Irradiation Responses Using Microarray Based Gene Networks
  Coleman, M.A., Peterson, L., Critchlow, T. and Wyrobek, A.J. (Participating Consortium members: Slezak, T., Nelson, D., Ludaescher, B., Gupta, A., Altintas, I., Potok, T., Vouk, M., Pu, C., Liu, L., Buttler, D., Rocco, D., Paques, H., Han, W.)
  
  
• 2001 Workshops:
  Cytogenetic Confirmation and Transcriptional Profiling of the Radioadaptive Response in Human Lymphoblastoid Cell Lines
  Coleman, M.A., Yin, E., Peterson, L.E.,Sorensen, K., Tucker, J., and Wyrobek, A.J.
  
  Comparative Effects of Low-Dose Ionizing Radiation on Transcription Profiling of Stress-Response and DNA-Repair Genes Among Human and Mouse Cells
  Yin, E., Coleman, M.A., Peterson, L.E., Tomascik-Cheeseman, L., Mascio-Kegelmeyer, L., and Wyrobek, A.J.
  
  

Narayan, S., Lehmann, J., Coleman, M.A. , Vaughan , A., Yang, C.C., Enepekides, D., Farwell, G., Purdy, J.A., Laredo , G. Nolan, K., Pearson, F. and Vijayakumar, S. (2008) Prospective evaluation to establish a dose response for clinical oral mucositis in patients undergoing head and neck conformal radiotherapy. Int J Radiat Oncol Biol Phys. (Epub ahead of print).

Martinez , A., Hinz, J., Gomez, L., Molina, B., Acuna, H., Frias, S. and Coleman, M.A. (2008). Differential expression of TP53 associated genes in fanconi anemia cells after mitomycin C and hydroxyurea treatment. Mutat. Res. (Epub ahead of print).

Liu, L., Zhang, J., Han, W., Pu, C., Caverlee, J., Park, S., Critchlow, T., Coleman, M.A., and Buttler. D.  (2007) XWRAPComposer: A multi-page data extraction service for bio computing applications. International Journal of Web Services Research 3(2):33-60.

Peterson, L.E. and Coleman, M.A. (2006) Comparison of gene identification based on artificial neural network pre-processing with k-means cluster and principal component analysis. Lecture Notes in Artificial Intelligence 3849: 267-276.

Brooks, A.L., Coleman, M.A., Douple, E.B., Hall, E., Mitchel, R.E.J., Ullrich, R.L., and Wyrobek, A.J. (2006) Biological effects of low doses of ionizing radiation. In: Advances in Medical Physics 1:255-286.

Coleman, M.A., and Wyrobek, A.J. (2006) Differential transcript modulation of genes after low vs. high doses of ionizing radiation. In: Advances in Medical Physics: Biological Effects of Low Doses of Ionizing Radiation 273-276.

Marchetti, F., Coleman, M.A., Jones, I.M., and Wyrobek, A.J. (2006) Candidate protein biodosimeters of human exposure to ionizing radiation. Int. J. Radiat. Biol. 82(9):605-639.

Coleman, M.A., Yin, E., Peterson, L.E., Nelson, D., Sorensen, K., Tucker, J.D., and Wyrobek, A.J. (2005) Low-dose irradiation alters the transcript profiles of human lymphoblasoid cells including genes associated with cytogenetic radioadaptive response. Radiation Research 164(4 Pt 1):369-382.

Rao, R.S., Visuri, S.R., McBride, M.T., Albala, J.S., Matthews, D.L., and Coleman, M.A. (2004) Comparison of multiplexed techniques for detection of bacterial and viral proteins. J. of Proteome Research 3:736-742.

Tomascik-Cheeseman, L.M., Coleman, M.A., Marcetti, F., Nelson, D.O., Kegelmeyer, L.M., Nath, J., and Wyrobek, A.J. (2004) Differential basal expression of genes associated with stress response, damage control, and DNA repair among mouse tissues. Mutation Research 561:1-14.

Coleman, M.A., Miller, K.A., Beernink, P.T., Yoshikawa, D.M., and Albala, J.S. (2003) Identification of chromatin-related protein interactions using protein microarrays. Proteomics 3:2101-2107.

Yin, E., Nelson, D.O., Coleman, M.A., Peterson, L.E., and Wyrobek, A.J. (2003) Gene expression changes in mouse brain after exposure to low-dose ionizing radiation. International J. of Radiation Biology 79(10):759-775.

Coleman, M.A., Eisen, J.A., and Mohrenwiser, H.W. (2000) Cloning and characterization of HARP/SMARCAL1: A prokaryotic HepA-related SNF2 helicase protein from human and mouse. Genomics 65:274-282.

Buttler, D., Coleman, M.A., Critchlow, T., Fileto, R., Han, W., Liu, L., Pu, C., Rocco, D., and Xiong, L. (Dec. 2002) Querying multiple bioinformatics information sources: Can Semantic Web research help? In: SIGMOD Record [online journal] 31(4):59-64. [cited 12, February 2003] http://www.acm.org/sigs/sigmod/record/